Datasets
Table of Contents - Dataset Description - Dataset Summary - Supported Tasks and Leaderboards - Languages - Dataset Structure - Data Instances - Data Fields -…
Table of Contents - Dataset Description - Dataset Summary - Supported Tasks - Languages - Dataset Structure - Data Instances - Data Fields - Data Splits -…
Original dataset introduced by Jin et al.
Homepage: http://www.biocreative.org/tasks/biocreative-v/track-3-cdr/ - Pubmed: True - Public: True - Tasks:
BBBP (Blood-Brain Barrier Penetration) dataset [[1]](1), part of MoleculeNet [[2]](2) benchmark.
The dataset is organized into 3 folders (train, test, val) and contains subfolders for each image category (Pneumonia/Normal).
Homepage: https://github.com/pubmedqa/pubmedqa - Pubmed: True - Public: True - Tasks:
Dataset artifact mirrored from the HuggingFace Hub.
Dataset artifact mirrored from the HuggingFace Hub.
Dataset artifact mirrored from the HuggingFace Hub.
This dataset was scrapped from the MedQuAD repository and then converted to a csv file.
MACCROBAT-biomedical-ner This data is the same data from here, the only difference is that it has been converted into the Huggingface dataset format.
1 Source Source:
Table of Contents - Table of Contents - Dataset Description - Dataset Summary - Supported Tasks and Leaderboards - Languages - Dataset Structure - Data…
Dataset artifact mirrored from the HuggingFace Hub.
Dataset artifact mirrored from the HuggingFace Hub.
Dataset artifact mirrored from the HuggingFace Hub.
Data Source
Dataset artifact mirrored from the HuggingFace Hub.
Dataset artifact mirrored from the HuggingFace Hub.
dataRAD veri seti, radyoloji görüntüleri üzerinde görsel soru-cevaplama (VQA) araştırmaları yapmak amacıyla Türkçeye çevrilmiş ve LLaVa mimarisiyle uyumlu…
Dataset for whole-bacterial genomes clustering (Protein
Dataset for phenotypic traits prediction from whole-bacterial genomes (protein
Dataset for essential genes prediction in bacterial genomes (Protein
Dataset artifact mirrored from the HuggingFace Hub.
Description Gold standard annotations for profession detection in Spanish COVID-19 tweets The entire corpus contains 10,000 annotated tweets.
ProteinGym is a benchmark suite for evaluating protein fitness prediction and design models.
Dataset artifact mirrored from the HuggingFace Hub.
Complete UniRef90 dataset from UniProt, converted from XML to sharded Parquet.
Dataset Card for Dataset Name The nucleotidetransformerdownstreamtasks dataset features the 18 downstream tasks presented in the Nucleotide Transformer paper.
Repository: Nucleotide Transformer - Paper: The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human
Dataset artifact mirrored from the HuggingFace Hub.
OpenGenome2 is a database of nearly 9 trillion base pairs of curated DNA from across all domains of life.
Tahoe-100M Tahoe-100M is a giga-scale single-cell perturbation atlas consisting of over 100 million transcriptomic profiles from 50 cancer cell lines exposed…
HIV dataset [[1]](1), part of MoleculeNet [[2]](2) benchmark.
Tox21 dataset [[1]](1), part of MoleculeNet [[2]](2) benchmark.
Load and return the ClinTox dataset, part of MoleculeNet [[1]](1) benchmark.
ESOL (Estimated SOLubility) dataset [[1]](1), part of MoleculeNet [[2]](2) benchmark.
To accompany OpenPhenom, Recursion is releasing the RxRx3-core dataset, a challenge dataset in phenomics optimized for the research community.
Dataset artifact mirrored from the HuggingFace Hub.
Dataset for antibiotic resistance prediction from whole-bacterial genomes (protein
Dataset Overview This dataset features the 8 evaluation tasks presented in the AgroNT (A Foundational Large Language Model for Edible Plant Genomes) paper.
Dataset artifact mirrored from the HuggingFace Hub.
Dataset Card for
[!IMPORTANT] The pdb-rnasecondarystructure dataset is in beta test.
Dataset artifact mirrored from the HuggingFace Hub.
Dataset artifact mirrored from the HuggingFace Hub.
Dataset artifact mirrored from the HuggingFace Hub.
Official repository for the ProteinGym benchmarks
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein…
PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
Plausibility checks for generated molecule poses.
Benchmarking DNA Language Models on Biologically Meaningful Tasks
CZ CELLxGENE Discover Census
Formalizing and benchmarking open problems in single-cell genomics
cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.
Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science
Foster the development of impactful AI models in drug discovery.
Benchmark datasets, data loaders, and evaluators for graph machine learning
Images and other data from the JUMP Cell Painting Consortium
The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.
The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than…
The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the…
The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation…
The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and…
The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs).
RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating…
ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc).
PubChem provides information on the biological activities of small molecules.
BindingDB is the first public database of protein-small molecule affinity data.
Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies.
The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data…
The complete SARS-CoV-2 reference genome and its gene annotation, in two files small enough to open in a browser.
The training corpus of Fully Open Meditron (EPFL, LiGHT laboratory): about 601k examples ( 150M tokens) for supervised fine-tuning of clinical LLMs.
Synapse is a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate.
The public demonstration datasets 10x Genomics publishes for its platforms: single-cell gene expression, immune profiling, ATAC and multiome (Chromium), and…