Datasets
Synapse is a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate.
The training corpus of Fully Open Meditron (EPFL, LiGHT laboratory): about 601k examples ( 150M tokens) for supervised fine-tuning of clinical LLMs.
The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data…
Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies.
BindingDB is the first public database of protein-small molecule affinity data.
PubChem provides information on the biological activities of small molecules.
ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc).
RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating…
The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs).
The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and…
The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation…
The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the…
The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than…
The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.
Benchmark datasets, data loaders, and evaluators for graph machine learning
Foster the development of impactful AI models in drug discovery.
Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science
Benchmarking DNA Language Models on Biologically Meaningful Tasks
Plausibility checks for generated molecule poses.
PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)